1. Staff

Larry York, Ph.D. Publications

Publication List

Guo, H., Ayalew, H., Seethepalli, A., Dhakal, K., Griffiths, M., Ma, X - F. & York, L. M. (2021). Functional phenomics and genetics of the root economics space in winter wheat using high-throughput phenotyping of respiration and architecture. New Phytologist, (Accepted Author Manuscript), https://doi.org/10.1111/nph.17329.

Dhanapal, A. P., York, L. M., Fritschi, F. B. & Hames, K. A. (2021). Genome-wide association study of topsoil root system architecture in field-grown soybean [Glycine max (L.) Merr.]. Frontiers in Plant Science, 11:590179, doi: 10.3389/fpls.2020.590179.

Bardham, K., York, L. M., Hasanuzzaman, M., Parekh, V., Jena, S. & Pandya, M. (2021). Can smart nutrient applications optimize the plant's hidden half to improve drought resistance? Physiologia Plantarum, (epub ahead of print).

Griffiths, M., Roy, S., Guo, H., Seethepalli, A., Huhman, D. V., Ge, Y. X., Sharp, R. E., Fritschi, F. B. & York, L. M. (2020). A multiple ion-uptake phenotyping platform reveals shared mechanisms that affect nutrient uptake by maize roots. Plant Physiology, kiaa080 (accepted manuscript), https://doi.org/10.1093/plphys/kiaa080.

Burridge, J., Nord, E. A., Postma, J. A., York, L. M. & Lynch, J. (2020). An Analysis of Soil Coring Strategies to Estimate Root Depth in Maize (Zea mays) and Common Bean (Phaseolus vulgaris). Plant Phenomics, 2020 (3252703), https://doi.org/10.34133/2020/3252703.

Freschet, G. T., Roumet, C., Comas, L. H., Weemstra, M., Bengough, A. G., Rewald, B., Bardgett, R. D., De Deyn, G. B., Johnson, D., Klimešová, J., Lukac, M., McCormack, M. L., Meier, I. C., Pagès, L., Poorter, H., Prieto, I., Wurzburger, N., Zadworny, M, Bagniewska-Zadworna, A., Blancaflor, E. B., Brunner, I., Gessler, A., Hobbie, S. E., Iversen, C. M., Mommer, L., Picon-Cochard, C., Postma, J. A., Rose, L., Ryser, P., Scherer-Lorenzen, M., Soudzilovskaia, N. A., Sun, T., Valverde-Barrantes, O. J., Weigelt, A., York, L. M. & Stokes, A. (2020). Root traits as drivers of plant and ecosystem functioning: current understanding, pitfalls and future research needs. New Phytologist, (accepted manuscript).

Fonseca, J. P., Lee, H-K., Boschiero, C., Griffiths, M., Lee, S., Zhao, P. X., York, L. M. & Mysore, K. S. (2020). Iron-sulfur cluster protein NFS1 and its interactor FRATAXIN play a novel role in plant innate immunity. Plant Physiology, (epub ahead of print), doi: 10.1104/pp.20.00950.

Guerrero-Ramirez, N., Mommer, L., Freschet, G. T., Iversen, C. M., McCormack, M. L., Kattge, J., Poorter, H., van der Plas, F., Bergmann, J., Kuyper, T. W., York, L. M., Bruelheide, H., Laughlin, D. C., Meier, I. C., Roumet, C., Semchenko, M., Sweeney, C. J., van Ruijven, J., Valverde-Barrantes, O. J., Aubin, A., Catford, J. A., Manning, P., Martin, A., Milla, R., Minden, V., Pausas, J. G., Smith, S. W., Soudzilovskaia, N. A., Ammer, C., Butterfield, B., Craine, J., Cornelissen, J. H., de Vries, F. T., Isaac, M. E., Kramer, K., König, C., Lamb, E. G., Onipchenko, V. G., Peñuelas, J., Reich, P. B., Rillig, M. C., Sack, L., Shipley, B., Tedersoo, L., Valladares, F., van Bodegom, P., Weigelt, P., Wright, J. P. & Weigelt, A. (2020). Global root traits (GRooT) database. Global Ecology and Biogeography, 00 (epub ahead of print), 1-13 https://doi.org/10.1111/geb.13179.

Bergmann, J., Weigelt, A., van der Plas, F., Laughlin, D. C., Kuyper, T. W., Guerrero-Ramirez, N., Valverde-Barrantes, O. J., Bruelheide, H., Freschet, G. T., Iversen, C. M., Kattge, J., McCormack, M. L., Meier, I. C., Rillig, M. C., Roumet, C., Semchenko, M., Sweeney, C. J., van Ruijven, J., York, L. M. & Mommer, L. (2020). The fungal collaboration gradient dominates the root economics space in plants. Science Advances, 6 (27), eaba3756 doi: 10.1126/sciadv.aba3756.

Griffiths, M. & York, L. M. (2020). Targeting root ion uptake kinetics to increase plant productivity and nutrient use efficiency. Plant Physiology, 182 (4), 1854-1868 doi: 10.1104/pp.19.01496.

Seethepalli, A., Guo, H., Liu, X. W., Griffiths, M., Almtarfi, H., Li, Z., Liu, S., Zare, A., Fritschi, F. B., Blancaflor, E. B., Ma, X - F. & York, L. M. (2020). RhizoVision Crown: An integrated hardware and software platform for root crown phenotyping. Plant Phenomics, vol. 2020, Article ID 3074916, 15 pages, 2020 https://doi.org/10.34133/2020/3074916.

Le Marié, C. A., York, L. M., Strigens, A., Malosetti, M., Camp, K-H, Giuliani, S., Lynch, J. P. & Hund, A. (2019). Shovelomics root traits assessed on the EURoot maize panel are highly heritable across environments but show low genotype-by-nitrogen interaction. Euphytica, 215 (10), UNSP 173 doi: 10.1007/s10681-019-2472-8.

Blancaflor, E. B. & York, L. M. (2019). Measuring the hidden half of forages. Noble News & Views, 37 (8), 9-11.

York, L. M. & Seethepalli, A. (2019). Plants in the spotlight: measuring shoots from images. Noble News & Views, 37 (8), 5-7.

Guo, H. & York, L. M. (2019). Maize with fewer nodal roots allocates mass to more lateral and deep roots that improve nitrogen uptake and shoot growth. Journal of Experimental Botany, 70 (19), 5299-5309 doi: 10.1093/jxb/erz258.

Mattupalli, C., Seethepalli, A., York, L. M. & Young, C. A. (2019). Digital imaging to evaluate root system architectural changes associated with soil biotic factors. Phytobiomes Journal, 3 (2), 102-111 doi: 10.1094/pbiomes-12-18-0062-r.

York, L. M. (2019). Functional phenomics: An emerging field integrating high-throughput phenotyping, physiology, and bioinformatics. Journal of Experimental Botany, 70 (2), 379-386 doi: 10.1093/jxb/ery379.

Huang, H., Liang, L., Sturrock, C. J., Pandey, B. K., Giri, J., Mairhofer, S., Wang, D., Muller, L., Tan, H., York, L. M., Yang, J., Song, Y., Kim, Y-J, Qiao, Y., Xu, J., Kepinski, S., Bennett, M. J. & Zhang, D. (2018). Rice actin binding protein RMD controls crown root angle in response to external phosphate. Nature Communications, 9 (2346), doi: 10.1038/s41467-018-04710-x.

York, L. M. (2018). Why roots matter to soil, plants and you. Noble News & Views, June 1, pg. 8-9.

Seethepalli, A., York, L. M., Almtarfi, H., Fritschi, F. B. & Zare, A. (2018). A novel multi-perspective imaging platform (M-PIP) for phenotyping soybean root crowns in the field increases throughput and separation ability of genotype root properties. BioRxiv, (preprint), doi: https://doi.org/10.1101/309161.

York, L. M., Slack, S., Bennett, M. J. & Foulkes, J. (2018). Wheat shovelomics I: A field phenotyping approach for characterising the structure and function of root systems in tillering species. BioRxiv, (preprint), doi: https://doi.org/10.1101/280875.

Slack, S., York, L. M., Roghazai, Y., Lynch, J., Bennett, M. J. & Foulkes, J. (2018). Wheat shovelomics II: Revealing relationships between root crown traits and crop growth. BioRxiv, (preprint), doi: https://doi.org/10.1101/280917.

York, L. M. (2018). Phenotyping crop root crowns: General guidance and specific protocols for maize, wheat, and soybean. In Ristova D., Barbez E. (eds), Root Development. Methods in Molecular Biology. (pp. 23-32). New York, NY: Springer New York.

York, L. M. & Lobet, G. (2017). Phenomics of root system architecture: Measuring and analyzing root phenes. Teaching Tools in Plant Biology: Lecture Notes. Plant Cell, 29 (9), doi: 10.1105/tpc.117.tt0917.

York, L. M., Carminati, A., Mooney, S. J., Ritz, K. & Bennett, M. J. (2016). The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots. Journal of Experimental Botany, 67 (12), 3629-3643 doi:10.1093/jxb/erw108.

York, L. M., Silberbush, M. & Lynch, J. (2016). Spatiotemporal variation of nitrate uptake kinetics within the maize (Zea mays L.) root system is associated with greater nitrate uptake and interactions with architectural phenes. Journal of Experimental Botany, 67 (12), 3763-3775 doi:10.1093/jxb/erw133.

Colombi, T., Kirchgessne, N., Le Marié, C. A., York, L. M., Lynch, J. & Hund, A. (2015). Next generation shovelomics: set up a tent and REST. Plant and Soil, 388 (1), 1-20 doi:10.1007/s11104-015-2379-7.

York, L. M., Galindo-Castañeda, T., Schussler, J. R. & Lynch, J. (2015). Evolution of US maize (Zea mays L.) root system architectural and anatomical phenes over the past 100 years corresponds to increased tolerance of nitrogen stress. Journal of Experimental Botany, 66 (8), 2347-2358 doi:10.1093/jxb/erv074.

York, L. M. & Lynch, J. (2015). Intensive field phenotyping of maize (Zea mays L.) root crowns identifies phenes and phene integration associated with plant growth and nitrogen acquisition. Journal of Experimental Botany, 66 (18), 5493-5505 doi:10.1093/jxb/erv241.

Bucksch, A., Burridge, J., York, L. M., Das, D., Nord, E. A., Weitz, J. S. & Lynch, J. (2014). Image-Based High-Throughput Field Phenotyping of Crop Roots. Plant Physiology, 166 (2), 470-486 http://dx.doi.org/10.1104/pp.114.243519.

Zhang, C., Postma, J. A., York, L. M. & Lynch, J. (2014). Root foraging elicits niche complementarity-dependent overyielding in the ancient 'three sisters' (maize, bean, squash) polycultures. Annals of Botany, 114 (8), 1719-1733 doi:10.1093/aob/mcu191.

York, L. M., Nord, E. A. & Lynch, J. (2013). Integration of root phenes for soil resource acquisition. Frontiers in Plant Science, 4 (355), doi: 10.3389/fpls.2013.00355.