
Grind 3 g cells in liquid N2 (can use only 1-2 g cells with an equivalent decrease in buffer volume)
Add 2 ml ice cold buffer - see recipe below
Vortex; probe sonicate x 3-4 times in short bursts (keep the sample cold)
Centrifuge for 10', 4 C, 12-14000 x g
Recover the supernatant. I usually do a quick protein check here (Bio-Rad/Bradford)
Precipitate on ice with an equal volume of 25% TCA for 5-10' or @ -20 with an equal volume of 10% TCA/acetone for > 1 hr
Centrifuge for 5-10' @ 12-14000 x g
Decant the supernatant and wash the pellet x 2 with acetone (200 ul, 3-5' spin, 12-14000 x g)
Air dry the pellet (approximately 10')
Resuspend in 8 M Urea, 4 % CHAPS, 20 mM DTT, 0.2-0.5% biolytes – biolyte concentration depends on whether you plan to use Bio-Rad or Amersham strips
| Extraction Buffer (for 5 ml |
|
| 40 mM TRIS, pH 9.5 | 200 ul of 1 M |
| 50 mM Mg Cl2 | 500 ul of 0.5 M |
| 2 % PVPP (insoluble) | 0.1 g |
| 125 U/ml endonuclease | 2 ul solution |
| 1 mM PMSF | 5 ul (dissolve 8.7 mg in 50 ul acetone) |
| Milli Q water | |