Proteomics References

[i] O'Farrell, P. H.,  High Resolution Two-Dimensional Electrophoresis, J. Biol. Chem., 250, 4007-4021, 1975.

[ii] Blackstock, W. P., Weir, M. P., Proteomics: Quantitative and Physical Mapping of Cellular Proteins, Trends in Biotechnology, 17, 121-127, 1999.

[iii] Klose, J., Kobalz, U., Two-dimensional Electrophoresis of Proteins:  An Updated Protocol and Implications for a Functional Analysis of the Genome, Electrophoresis, 16, 1034-1059, 1995.

[iv] Thiellement, H., Bahrman, N., Damerval, C., Plomion, C., Rossignol, M., Santoni, V., de Vienne, D., Zivy, M., Proteomics for Genetic and Physiological Studies in Plants, Electrophoresis, 20, 2013-2026, 1999.

[v] Wagoner, W., Loschke, D.C., Hadwiger, L. A. Two-dimensional electrophoretic analysis of in vivo and in vitro synthesis of proteins in peas inoculated with compatible and incompatible Fusarium solani.  Physiological Plant Pathology, 20, 99-107, 1982.

[vi] Mueller-Uri, F., Parthier, B., Nover, L. Jasmonate-induced alteration of gene expression in barley leaf segments analyzed by in-vivo and in-vitro protein synthesis, Planta 176, 241-247, 1988.

[vii] Gygi, S. P., Corthals, G. L., Zhang, Y., Rochon, Y., Aebersold, R., Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology, Proc. Natl. Acad. Sci., 97,  9390-9395, 2000.

[viii] Gygi, S. P., Rist, B., Gerber, S.A., Turecek, F., Gelb, M., Aebersold, R., Quantitative Analysis of complex Protein Mixtures Using Isotope-coded Affinity Tags, Nat. Biotechnol. 1999, 17, 994-999.

[ix] Yates, J. R. III., Mass Spectrometry and the Age of the Proteome, J. Mass Spectrom., 33, 1-19, 1998.

[x] Jensen, O. N., Podtelejnikov, A., Matthias Mann, M., Delayed Extraction Improves Specificity in Database Searches by Matrix-assisted Laser Desorption/Ionization Peptide Maps, Rapid Commun. Mass Spectrom., 10, 1371-1378, 1996.

[xi] Karas, M., Hillenkamp, Laser Desorption/Ionization of Proteins with Molecular Masses Exceeding 100,000 Daltons,  Anal. Chem., 60, 2299-2301, 1988.

[xii] Yamashita, M., Fenn, J. B., Electrospray Ion Source. Another Variation on the Free-Jet Theme, J. Phys. Chem., 88, 4451-4459, 1984.

[xiii] Fenn, J.B., Mann, M., Meng, C. K., Wong, S. F., Whitehouse, C. M., Electrospray Ionization-Principles and Practice, Mass Spec. Rev., 9, 37-70 , 1990.

[xiv] Smith, R. D., Loo, J. A., Ogorzalek Loo, R. R., Bushman, M., Udseth, H. R., Principles and Practice of Electrospray Ionization-Mass Spectrometry for Large Polypeptides and Proteins, Mass Spec. Rev., 10, 359-451, 1991.

[xv] Blum, H., Beier, H., Gross, H. J., Improved Silver Staining of Plant Proteins, RNA and DNA in Polyacrylamide Gels, Electrophoresis, 1987, 8, 93-99.

[xvi] Shevchenko, A., Wilm, M., Vorm, O., Mann, M., Mass Spectrometric Sequencing of Proteins from Silver-Stained Polyacrylamide Gels, Anal. Chem., 1996, 68, 850-858.

[xvii] Sumner, L.W., Folimonova ,S. Y., Nelson, R. S., Profiling and Identification of Viral and Host Proteins in Tobacco Mosaic Virus RNA Replicase Complexes by PAGE and MALDI-TOF-MS, Proceedings of the 48yh American Society for Mass Spectrometry Conference on Mass Spectrometry and Allied Topics, 2000, Palm Springs, CA.

[xviii] H. J. Mussa, L. W. Sumner, M. J. Harrison, The use of proteomics to elucidate the changes in cellular behavior in Medicago truncatula in response to colonization by Glomus versiforme, Proceedings of the 6th International Congress of Plant Molecular Biology, Québec, Canada, June 18-24, 2000

[xix] Browning, K. S., The Plant Translational Apparatus, Plant. Mol. Biol. 1996, 32, 107-144.

[xx] Buck, K.W. Comparison of the Replication of Positive-Stranded RNA Viruses of Plants and Animals, in Advances in Virus Research, Vol. 47, pg 159-249.

[xxi] Buck, K.W., Replication of tobacco mosaic virus RNA, Phil. Times. R. Soc. Lond, 1999, 354, 613-627.

[xxii] Lai, M. M. C., Cellular Factors in the Transcription and Replication of Viral RNA Genomes: A Parallel to DNA-Dependent RNA Transcription, Virology, 1998, 244, 1-12.

[xxiii] Futcher et al., 1999; Gygi et al., 1999

[xxiv] Gorg et al., 1999; Klose and Kobalz, 1995

[xxv] Pappin et al., 1993; Rabilloud, 2000; Yates III, 1998; Yates, 1998