Plant Biology Division: Publications (Last 12 months)

See a complete list of publications in the Noble Publication Listing.

Kaundal, R., & Raghava, G. P. (2009). RSLpred: an integrative system for predicting subcellular localization of rice proteins combining compositional and evolutionary information. Proteomics, 9 (9), 2324–2342, DOI:10.1002/pmic.200700597.

Bamunusinghe, D., Hemenway, C. L. , Nelson, R. S., Sanderfoot, A. A., Ye, C-M., Silva, M. A. , Payton, M., & Verchot-Lubicz, J. (2009). Analysis of Potato virus X replicase and TGBp3 subcellular locations. Virology, 393 (2), 272-285 DOI: 10.1016/j.virol.2009.08.002.

Dyachok, J. , Yoo, C. M., Palanichelvam, K., & Blancaflor, E. B. (2009). Sample preparation for fluorescence imaging of the cytoskeleton in fixed and living plant roots. In Gavin, R. H. (Ed.), Cytoskeleton Methods and Protocols : Methods in Molecular Biology series. (pp. 157-169). Totowa, New Jersey: Humana Press.

Harries, P. A. , Park, J - W., Sasaki, N., Ballard, K. D., Maule, A. J., & Nelson, R. S. (2009). Differing requirements for actin and myosin by plant viruses for sustained intercellular movement. PNAS (Proceedings of the National Academy of Sciences), 106 (41), 17594-17599 doi: 10.1073/pnas.0909239106.

Farag, M. A., Deavours, B., de Fatima, A., Naoumkina, M., Dixon, R. A., & Sumner, L. W. (2009). Integrated metabolite and transcript profiling identify a biosynthetic mechanism for hispidol in Medicago truncatula cell cultures. Plant Physiology, DOI:10.1104/pp.109.141481.

Ott, T., Sullivan, J., James, E. K., Flemetakis, M., Gunthur, C., Gibon, Y., Ronson, C., & Udvardi, M. K. (2009). Absence of symbiotic leghemoglobins alters bacteroid and plant cell differentiation during development of Lotus japonicus root nodules. Molecular Plant-Microbe Interactions, 22 (7), 800-808 DOI:10.1094/MPMI-22-7-0800.

Guether, M., Balestrini, R., Hannah, M., He, J., Udvardi, M. K., & Bonfante, P. (2009). Genome-wide reprogramming of regulatory networks, transport, cell wall and membrane biogenesis during arbuscular mycorrhizal symbiosis in Lotus japonicus. New Phytologist, 182, 200-212 DOI:10.1111/j.1469-8137.2008.02725.x.

Gruber, V., Blanchet, S., Diet, A., Zahaf, O., Boulem, A., Kakar, K., Alunni, B., Udvardi, M. K., Frugier, F., & Crespi, M. (2009). Identification of transcription factors involved in root apex responses to salt stress in Medicago truncatula. Molecular Genetics and Genomics, 281 (1), 55-66 DOI:10.1007/s00438-008-0392-8.

Tsui, C. K. , Marshall, W., Yokoyama, M. L. , Honda, D., Lippmeier, J. C. , Craven, K. D., Peterson, P. D., & Berbee, M. L. (2009). Labyrinthulomycetes phylogeny and its implications for the evolutionary loss of chloroplasts and gain of ectoplasmic gliding. Molecular Phylogenetics and Evolution, 50 (1), 129-140 DOI:10.1016/j.ympev.2008.09.027.

Kim, S-C., Kang, L., Nagaraj, S., Blancaflor, E. B. , Mysore, K. S., & Chapman, K. D. (2009). Mutations in Arabidopsis fatty acid amide hydrolase reveal that catalytic activity influences growth but not sensitivity to abscisic acid or pathogens. Journal of Biological Chemistry, DOI:10.1074/jbc.M109.059022.

Hernandez, G., Valdes-Lopez, O., Ramirez, M., Goffard, N., Weiller, G., Aparicio-Fabre, R., Fuentes, S. I. , Erban, A., Kopka, J., Udvardi, M. K., & Vance, C.P. (2009). Global changes in the transcript and metabolic profiles during symbiotic nitrogen fixation in phosphorus-stressed common bean plants . Plant Physiology, DOI:10.1104/pp.109.143842 .

Uppalapati, S. R., Marek, S. M., Lee, H-K. , Nakashima, J., Tang, Y., Sledge, M. K., Dixon, R. A., & Mysore, K. S. (2009). Global gene expression profiling during Medicago truncatula-Phymatotrichopsis omnivora interaction reveals a role for jasmonic acid, ethylene, and the flavonoid pathway in disease development. MPMI - Molecular Plant-Microbe Interactions, 22 (1), 7-17 DOI:10.1094/MPMI -22-1-0007.

Myers, T., Chengedza, S., Lightfoot, S., Pan, Y., Dedmond, D., Cole, L., Tang, Y., & Benbrook, D. M. (2009). Flexible heteroarotinoid (Flex-Het) SHetA2 inhibits angiogenesis in vitro and in vivo. Investigational New Drugs, 27 (4), 304-318 DOI:10.1007/s10637-008-9175-7.

Tadege, M., Wen, J. Q., Ratet, P., & Mysore, K. S. (2009). Mutagenesis and Beyond! Tools for understanding legume biology. Plant Physiology, , DOI:10.1104/pp.109.144097.

Jiang, Q., Zhang, J., Guo, X., Monteros, M. J., & Wang, Z - Y. (2009). Physiological characterization of transgenic alfalfa (Medicago sativa) plants for improved drought tolerance. International Journal of Plant Sciences, 170 (8), 969-978 doi: 10.1086/600138.

Senthil-Kumar, M., Hema, R., Suryachandra, T. R. , Ramegowda, H. V. , Gopalakrishna, R. , Rama, N., Udayakumar, M., & Mysore, K. S. (2009). Functional characterization of three water deficit stress-induced genes in tobacco and Arabidopsis: An approach based gene down regulation. Plant Physiology Biochemistry, DOI:10.1016/j.plaphy.2009.09.005.

Libault, M., Joshi, T., Benedito, V. A., Xu, D. , Udvardi, M. K., & Stacey, G. (2009). Legume transcription factor genes; what makes legumes so special? Plant Physiology, , DOI:10.1104/pp.109.144105 .

Puckette, M., Peal, L., Steele, J., Tang, Y., & Mahalingam, R. (2009). Ozone responsive genes in Medicago truncatula: Analysis by suppression subtraction hybridization. Journal of Plant Physiology, 166, 1284-1295, DOI:10.1016/j.jplph.2009.01.009.

Zhao, J., & Dixon, R. A. (2009). MATE transporters facilitate vacuolar uptake of epicatechin 3'-O-glucoside for proanthocyanidin biosynthesis in Medicago truncatula and Arabidopsis. Plant Cell, , DOI:10.1105/tpc.109.067819.

Hogslund, N., Radutoiu, S., Krusell, L., Voroshilova, V., Hannah, M., Goffard, N., Sanchez, D.H., Lippold, F., Ott, T., Sato, S., Tabata, S., Liboriussen, P., Lohmann, G., Schauser, L. , Weiller, G., Udvardi, M. K., & Stougaard, J. (2009). Dissection of symbiosis and organ development by integrated transcriptome analysis of Lotus japonicus mutant and wild-type plants. PLoS One, 4 (8), e6556 DOI: 10.1371/journal.pone.0006556.

Pang, Y., Wenger, J., Saathoff, K., Peel, G. J., Wen, J. Q., Huhman, D. V., Allen, S. N., Tang, Y., Cheng, X., Tadege, M., Ratet, P., Mysore, K. S., Sumner, L. W., Marks, M. D., & Dixon, R. A. (2009). A WD40 repeat protein from Medicago truncatula is necessary for tissue-specific anthocyanin and proanthocyanidin biosynthesis, but not for trichome development. Plant Physiology, , DOI:10.1104/pp.109.144022 .

Mysore, K. S., Wang, K., Muthappa, S.-K., Ryu, C-M., & Kang, L. (2009). Breakdown of basal resistance in Nicotiana benthamiana and Arabidopsis against host and nonhost pathogens. In American Phytopathological Society Annual Meeting (pp. S168). Portland, Oregon: American Phytopathological Society.

Udvardi, M. K. (2009). Gene atlas project looks to identify gene function. Ag News and Views, July.

Marks, M. D., Wenger, J., Gilding, E., Jilk, R., & Dixon, R. A. (2009). Transcriptome analysis of Arabidopsis wild-type and gl3-sst sim trichomes identifies four additional genes required for trichome development. Molecular Plant, June 19, 1-20 DOI:10.1093/mp/ssp037.

Wang, G., & Dixon, R. A. (2009). Heterodimeric geranyl(geranyl)diphosphate synthase from hop (Humulus lupulus) and the evolution of monoterpene biosynthesis. PNAS (Proceedings of the National Academy of Sciences), 106 (24), 9914-9919 DOI:10.1073.pnas.0904069106.

Dobritsa, A. A., Nishikawa, S - I., Preuss, D., Urbanczyk-Wochniak, E., Sumner, L. W., Hammond, A., Carlson, A. L., & Swanson, R. J. (2009). LAP3, a novel plant protein required for pollen development, is essential for proper exine formation. Sexual Plant Reproduction, 22 (3), 167-177 doi: 10.1007/s00497-009-0101-8.

Peel, G. J., Pang, Y., Modolo, L. V. , & Dixon, R. A. (2009). The LAP1 MYB transcription factor orchestrates anthocyanidin biosynthesis and glycosylation in Medicago. Plant Journal, 59 (1), 136-149, DOI:10.1111/j.1365-313X.2009.03885.x.

Kouri, E. D., Labrou, N. E., Garbis, S. D., Kalliampakou, K. I. , Stedel, C., Dimou, M., Udvardi, M. K., & Flemetakis, M. (2009). Molecular and biochemical characterization of the parvulin-type PPIases in Lotus japonicus. Plant Physiology, 150 (3), 1160-1173 DOI:10.1104/pp.108.132415 .

Sawasdipuksa, N., Sumner, L. W., Lei, Z., & Sangvanich, P. (2009). Proteome analysis of Pithecellobium dulce seeds using two-dimensional gel electrophoresis and tandem mass spectrometry . Journal of the Science of Food and Agriculture, 89 (8), 1284-1291.

Ma, X-F., Wright, E., Ge, Y. X., Bell, J., Xi, Y., Bouton, J. H., & Wang, Z. Y. (2009). Improving phosphorus acquisition of white clover (Trifolium repens L.) by transgenic expression of plant-derived phytase and acid phosphatase genes. Plant Science, 176 (4), 479-488, DOI:10.1016/j.plantsci.2009.01.001.

Webb, R., Wren, J. D., Jeffries, M., Kelly, J. A., Kaufman, K. M., Tang, Y., Frank, M. B., Merrill, J., Kimberly, R. P., Edberg, J. C., Ramsey-Goldman, R., Petri, M., Reveille, J. D., Alarcon, G. S., Vila, L. M. , Alarcon-Riquelme, M. E., James, J. A., Vyse, T. J., Moser, K. L., Gaffney, P. M., Gilkeson, G. S., Harley, J. B., & Sawalha, A. H. (2009). Variants within MECP2, a key transcription regulator, are associated with increased susceptibility to lupus and differential gene expression in patients with systemic lupus erythematosus. Arthritis & Rheumatism, 60 (4), 1076-1084 DOI:10.1002/art.24360.

Van der Ent, S., Van Hulten, M., Pozo, M. J. , Czechowski, T., Udvardi, M. K., Pieterse, C. M. , & Ton, J. (2009). Priming of plant innate immunity by rhizobacteria and B-aminobutyric acid: differences and similarities in regulation. New Phytologist, 183, 419–431 DOI: 10.1111/j.1469-8137.2009.02851.x.

Scofield, S. R. , & Nelson, R. S. (2009). Resources for virus-induced gene silencing in the grasses. Plant Physiology, 149, 152-157 DOI:10.1104/pp.108.128702.

Harries, P. A. , Palanichelvam, K., Yu, W., Schoelz, J. E., & Nelson, R. S. (2009). The Cauliflower mosaic virus protein P6 forms motile inclusions that traffic along actin microfilaments and stabilize microtubules. Plant Physiology, 149 (2), 1005-1016, DOI:10.1104/pp.108.131755.

Gregory, A. L., Hurley, B. A. , Tran, H. T. , Valentine, A. J. , She, Y-M, Knowles, V. L. , & Plaxton, W. C. (2009). In vivo regulatory phosphorylation of the phosphoenolpyruvate carboxylase AtPPC1 in phosphate-starved Arabidopsis thaliana. Biochemical Journal , 420, 57-65, DOI:10.1042/BJ20082397.

Larue, C. T. , Wen, J. Q., & Walker, J. C. (2009). A microRNA–transcription factor module regulates lateral organ size and patterning in Arabidopsis. Plant Journal, 58 (3), 450-463 DOI:10.1111/j.1365-313X.2009.03796.

Pan, J., Fujioka, S., Peng, L., Chen, J. , Li, G., & Chen, R. (2009). The E3 ubiquitin ligase SCFTIR1/AFB and membrane sterols play key roles in auxin regulation of endocytosis, recycling, and plasma membrane accumulation of the auxin efflux transporter PIN2 in Arabidopsis thaliana. Plant Cell, 21, 568-580.

Young, N. D., & Udvardi, M. K. (2009). Translating Medicago truncatula genomics to crop legumes . Current Opinion in Plant Biology, 12 (2), 193-201, DOI:10.1016/j.pbi.2008.11.005.

Freudenberg, J., Wang, M., Yang, Y., & Li, W. (2009). Partial correlation analysis indicates causal relationships between GC-content, exon density and recombination rate in the genome. In The Seventh Asia Pacific Bioinformatics Conference (pp. S66). Beijing, China: BMC Bioinformatics.

Ryu, C-M., & Mysore, K. S. (2009). Root agroinoculation method for virus induced gene silencing . January 13, United States Patent No: 7476780 B2.

Tian, L., Peel, G. J., Lei, Z., Aziz, N., Dai, X., He, J., Watson, B. S., Zhao, P. X., Sumner, L. W., & Dixon, R. A. (2009). Transcript and proteomic analysis of developing white lupin (Lupinus albus L.) roots. BMC Bioinformatics, 9, 1 DOI:10.1186/1471-2229-9-1.

Lippold, F., Sanchez, D.H., Musialak, M., Schlereth, A, Scheible, W-R., Hincha, D. K., & Udvardi, M. K. (2009). AtMyb41 regulates transcriptional and metabolic responses to osmotic stress in Arabidopsis thaliana. Plant Physiology, 149 (4), DOI:10.1104/pp.108.134874.

Valverde, R., Saha, P., Gutierrez, D., Ranjith-Kumar, C., Roossinck, M. J., & Kao, C. (2009). Bell pepper endornavirus: Host range, sequence and effect on cellular signaling. In American Phytopathology Society Annual Meeting (pp. S134). Portland, Oregon: American Phytopathology Society Annual Meeting.

Gomez, S. K. , Javot, H. , Deewatthanawong, P., Torres-Jerez, I., Tang, Y., Blancaflor, E. B. , Udvardi, M. K., & Harrison, M. J. (2009). Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis. BMC Plant Biology, 9 (10), DOI:10.1186/1471-2229-9-10.

Ghimire, S. R. , & Craven, K. D. (2009). Assessment of the root colonizing fungus Sebacina vermifera for drought tolerance in switchgrass (Panicum virgatum L.). In American Phytopathology Society Annual Meeting (pp. S43). Portland, Oregon: American Phytopathology Society.

Andreadeli, A., Flemetakis, M., Axarli, I., Dimou, M., Udvardi, M. K., Katinakis, P., & Labrou, N. E. (2009). Cloning and characterization of Lotus japonicus formate dehydrogenase: A possible correlation with hypoxia. BBA - Biochimica et Biophysica Acta - Proteins and Proteomics, 1794 (6), 976-984 DOI:10.1016/j.bbapap.2009.02.009.

Hajimorad, M. R., Ghabrial, S. A. , & Roossinck, M. J. (2009). De novo emergence of a novel satellite RNA of Cucumber mosaic virus following serial passages of the virus derived from RNA transcripts . Archives of Virology, 154 (1), 137-140 DOI:10.1007/s00705-008-0280-x.

Besser, K., Harper, A., Welsby, N. A., Schauvinhold, I., Slocombe, S.P, Li, Y., Dixon, R. A., & Broun, P. (2009). Divergent regulation of terpenoid metabolism in the trichomes of wild and cultivated tomato species. Plant Physiology, 149 (1), 499-514, DOI:10.1104/pp.108.126276.

Cloete, K. J., Valentine, A. J. , Stander, M. A., Blomerus, L., & Botha, A. (2009). Evidence of symbiosis between the soil yeast Cryptococcus laurentii and a sclerophyllous medicinal shrub, Agathosma betulina (Berg.) Pillans. Microbial Ecology, 57 (4), 624-632 DOI:10.1007/s00248-008-9457-9.

Uppalapati, S. R., Ishiga, Y., Wangdi, T., Ryu, C-M., Mysore, K. S., & Bender, C. L. (2009). Mechanisms of bacterial speck disease development in tomato: Functional role of a ubiquitin ligase and the chloroplast targeting virulence factor, coronatine. In American Phytopathology Society Annual Meeting (pp. S168). .

DeYoung, R. W. , Demarais, S., Gee, K. L., Honeycutt, R. L., Hellickson, M. W. , & Gonzales, R. A. (2009). Molecular evaluation of the white-tailed deer (Odocoileus virginianus) mating system. Journal of Mammalogy, 90 (4), 946-953 DOI:10.1644/08-MAMM-A-227.1.

Gutjahr, C., Novero, M., Guether, M., Montanari, O., Udvardi, M. K., & Bonfante, P. (2009). Presymbiotic factors released by the arbuscular mycorrhizal fungus Gigaspora margarita induce starch accumulation in Lotus japonicus roots. New Phytologist, 183 (1), 53-61, DOI:10.1111/j.1469-8137.2009.02871.x.

Modolo, L. V. , Escamilla-Trevino , L. L. , Dixon, R. A., & Wang, X. (2009). Single amino acid mutations of Medicago glycosyltransferase UGT85H2 enhance activity and impart reversibility . FEBS Letters, 583 (12), 2131-2135, DOI:10.1016/j.febslet.2009.05.046.

Craven, K. D., Clay, K., & Schardl, C. L. (2009). Tall fescue-systematics and morphology. In H. A. Fribourg, D. B. Hannaway, C. P. West (Eds.) , Tall Fescue for the Twenty First Century; Agronomy monograph 50. Madison, Wisconsin : A.S.A. & C.S.S..

Uppalapati, S. R., Li, W., Ishiga, Y., Sumner, L. W., Dixon, R. A., & Mysore, K. S. (2009). Targeted lignin modification confers tolerance to fungal pathogens in alfalfa. In American Phytopathology Society Annual Meeting (pp. S132). Portland, Oregon: American Phytopathology Society.

Charlton, N. D. , Ghimire, S. R. , & Craven, K. D. (2009). The so locus plays a role in the mutualistic interaction between Epichloë festucae and meadow fescue (Festuca pratensis). In American Phytopathology Society Annual Meeting (pp. S22). Portland, Oregon: American Phytopathology Society.

Uppalapati, S. R., Ishiga, Y., & Mysore, K. S. (2009). Towards identification of genes controlling nonhost resistance of Nicotiana benthamiana and Medicago truncatula to switchgrass rust. In American Phytopathology Society Annual Meeting (pp. S132). Portland, Oregon: American Phytopathology Society.

Harries, P. A. , Palanichelvam, K., Bhat, S., & Nelson, R. S. (2008). Tobacco mosaic virus 126-kDa protein increases the susceptibility of Nicotiana tabacum to other viruses and its dosage affects virus-induced gene silencing. Molecular Plant-Microbe Interactions, 21 (12), 1539-1548 DOI:10.1094/MPMI-21-12-1539.