Genomics Core Facility: Publications

Uppalapati, S. R., Ishiga, Y., Doraiswamy, V., Bedair, M., Mittal, S. , Chen, J. , Nakashima, J., Tang, Y., Tadege, M., Ratet, P., Chen, R., Schultheiss, H., & Mysore, K. S. (2012). Loss of abaxial leaf epicuticular wax in Medicago truncatula irg1/palm1 mutants results in reduced spore differentiation of anthracnose and nonhost rust pathogens. Plant Cell, January, doi/10.1105/tpc.111.093104.

Fu, C-X., Sunkar, R., Zhou, C. , Shen, H., Zhang, J - Y., Matts, J., Wolf, J., Mann, D.G.J., Stewart, C.N., Tang, Y., & Wang, Z - Y. (2012). Overexpression of miR156 in switchgrass (Panicum virgatum L.) results in various morphological alterations and leads to improved biomass production. Plant Biotechnology Journal, January, 1-10 doi:10.1111/j.1467-7652.2011.00677.x.

Shen, H., He, X-Z., Poovaiah, C.R., Wuddineh, W.A., Ma, W., Mann, D.G.J., Abercrombie, L., Wang, H., Jackson, L. A., Tang, Y., Stewart, C.N., Chen, F., & Dixon, R. A. (2012). Functional characterization of the switchgrass (Panicum virgatum) R2R3-MYB transcription factor PvMYB4 for improvement of lignocellulosic feedstocks. New Phytologist, 193, 121-136.

Kang, Y., Han, Y., Torres-Jerez, I., Wang, M., Tang, Y., Monteros, M. J., & Udvardi, M. K. (2011). System responses to long-term drought and re-watering of two contrasting alfalfa varieties. Plant Journal, August, doi:10.1111/j.1365-313X.2011.04738.x.

Zhou, C. , Han, L., Pislariu, C., Nakashima, J., Fu, C-X., Jiang, Q., Quan, L., Blancaflor, E. B., Tang, Y., Bouton, J. H., Udvardi, M. K., Xia, G., & Wang, Z - Y. (2011). From model to crop: identification of a STAY-GREEN gene from the model legume Medicago truncatula and effective use of gene in improving quality of alfalfa (M. sativa). Plant Physiology, September, doi:10.1104/pp.111.185140.

Puckette, M., Iyer, N. J., Tang, Y., Dai, X., Zhao, P. X., & Mahalingam, R. (2011). Differential mRNA translation in Medicago truncatula accessions with contrasting responses to ozone-induced oxidative stress. Molecular Plant, August 25, doi: 10.1093/mp/ssr069.

Gallego-Giraldo, L., Jikumaru, Y., Kamiya, Y., Tang, Y., & Dixon, R. A. (2011). Selective lignin downregulation leads to constitutive defense response expression in alfalfa (Medicago sativa L.). New Phytologist, 190, 627–639 doi:10.1111/j.1469-8137.2010.03621.x.

Tadege, M., Lin, H., Bedair, M., Berbel, A., Wen, J. Q., Rojas, C. M. , Niu, L., Tang, Y., Sumner, L. W., Ratet, P., McHale, N. A. , Madueno, F, & Mysore, K. S. (2011). STENOFOLIA regulates blade outgrowth and leaf vascular patterning in Medicago truncatula and Nicotiana sylvestris. Plant Cell, 23 (6), 2125-2142 doi:10.1105/tpc.111.085340.

Srivastava, A. C., Tang, Y., Diaz Garza, R. I., & Blancaflor, E. B. (2011). The plastidial folylpolyglutamate synthetase and root apical meristem maintenance . Plant Signaling & Behavior, 6 (5), 751 - 754 doi:10.1104/pp.110.138278.

Murray, J., Reddy, R., Duvvuru Muni , R. R., Torres-Jerez, I., Tang, Y., Allen, N. S., Andriankaja, M., Li, G., Laxmi, A., Cheng, X., Wen, J. Q., Vaughn, D., Schultze, M. , Sun, J., Charpentier, M., Oldroyd, G., Tadege, M., Ratet, P., Mysore, K. S., Chen, R., & Udvardi, M. K. (2011). Vapyrin, a gene essential for intracellular progression of arbuscular mycorrhizal symbiosis, is also essential for infection by rhizobia in the nodule symbiosis of Medicago truncatula . Plant Journal, 65 (2), 244-252 doi:10.1111/j.1365-313X.2010.04415.x .

Zhao, J., Huhman, D. V., Shadle, G., He, X-Z., Sumner, L. W., Tang, Y., & Dixon, R. A. (2011). MATE2 mediates vacuolar sequestration of flavonoid glycosides and glycoside malonates in Medicago truncatula. Plant Cell, 23, doi:10.1105/tpc.110.080804.

He, X-Z., Blount, J. W., Ge, S., Tang, Y., & Dixon, R. A. (2011). A genomic approach to isoflavone biosynthesis in kudzu (Pueraria lobata) . Planta, 233 (4), 843-855 doi:10.1007/s00425-010-1344-1.

Srivastava, A. C., Ramos-Parra, P. A. , Bedair, M., Robledo-Hernandez, A. L. , Tang, Y., Sumner, L. W., Diaz Garza, R. I., & Blancaflor, E. B. (2011). The folylpolyglutamate synthetase plastidial isoform is required for postembryonic root development in Arabidopsis. Plant Physiology, , doi:10.1104/pp.110.168278.

Morsy, M., Oswald, J., He, J., Tang, Y., & Roossinck, M. J. (2010). Teasing apart a three-way symbiosis: Transcriptome analyses of Curvularia protuberata in response to viral infection and heat stress. Biochemical and Biophysical Communications, 401 (2), 225-230 DOI:10.1016/j.bbrc.2010.09.034.

Jambunathan, N., Penaganti, A., Tang, Y., & Mahalingam, R. (2010). Modulation of redox homeostasis under suboptimal conditions by Arabidopsis nudix hydrolase 7. Plant Biology, 10, doi:10.1186/1471-2229-10-173.

Naoumkina, M., Modolo, L. V. , Huhman, D. V., Urbanczyk-Wochniak, E., Tang, Y., Sumner, L. W., & Dixon, R. A. (2010). Genomic and coexpression analyses predict multiple genes involved in triterpene saponin biosynthesis in Medicago truncatula. Plant Cell, 22, 850-866 DOI:10.1105/tpc.109.073270 .

Escamilla-Trevino , L. L. , Shen, H., Uppalapati, S. R., Ray, T., Tang, Y., Hernandez, T., Yin, Y., Xia, Y., & Dixon, R. A. (2010). Switchgrass (Panicum virgatum) possesses a divergent family of cinnamoyl CoA reductases with distinct biochemical properties. New Phytologist, 185 (1), 143-155 DOI: 10.1111/j.1469-8137.2009.03018.x .

Srivastava, A. C., Palanichelvam, K., Ma, J., Steele, J., Blancaflor, E. B. , & Tang, Y. (2010). Collection and analysis of expressed sequence tags derived from laser capture microdissected switchgrass (Panicum virgatum L. Alamo) vascular tissues. BioEnergy Research, February 14, DOI:10.1007/s12155-010-9080-8.

Benedito, V. A., Li, H., Dai, X., Wandrey, M., He, J., Kaundal, R., Torres-Jerez, I., Gomez, S. K. , Harrison, M. J., Tang, Y., Zhao, P. X., & Udvardi, M. K. (2010). Genomic inventory and transcriptional analysis of Medicago truncatula transporters. Plant Physiology, 152, 1716-1730 DOI: 10.1104/pp.109.148684.

Dai, X., Wang, G., Yang, D - S., Tang, Y., Broun, P., Marks, M. D., Sumner, L. W., Dixon, R. A., & Zhao, P. X. (2010). TrichOME: A comparative omics database for plant trichomes. Plant Physiology, 152, 44-54 DOI: 10.1104/pp.109.145813.

Shen, H., Fu, C-X., Xiao, X., Ray, T., Tang, Y., Wang, Z - Y., & Chen, F. (2009). Developmental control of lignification in stems of lowland switchgrass variety Alamo and the effects on saccharification efficiency. BioEnergy Research, 2, 233-245.

Myers, T., Chengedza, S., Lightfoot, S., Pan, Y., Dedmond, D., Cole, L., Tang, Y., & Benbrook, D. M. (2009). Flexible heteroarotinoid (Flex-Het) SHetA2 inhibits angiogenesis in Vitro and in Vivo. Investigational New Drugs, 27 (4), 304-318 DOI:10.1007/s10637-008-9175-7.

Pang, Y., Wenger, J., Saathoff, K., Peel, G. J., Wen, J. Q., Huhman, D. V., Allen, S. N., Tang, Y., Cheng, X., Tadege, M., Ratet, P., Mysore, K. S., Sumner, L. W., Marks, M. D., & Dixon, R. A. (2009). A WD40 repeat protein from Medicago truncatula is necessary for tissue-specific anthocyanin and proanthocyanidin biosynthesis but not for trichome development. Plant Physiology, 151 (3), 1114-1129 DOI:10.1104/pp.109.144022.

Webb, R., Wren, J. D., Jeffries, M., Kelly, J. A., Kaufman, K. M., Tang, Y., Frank, M. B., Merrill, J., Kimberly, R. P., Edberg, J. C., Ramsey-Goldman, R., Petri, M., Reveille, J. D., Alarcon, G. S., Vila, L. M. , Alarcon-Riquelme, M. E., James, J. A., Vyse, T. J., Moser, K. L., Gaffney, P. M., Gilkeson, G. S., Harley, J. B., & Sawalha, A. H. (2009). Variants within MECP2, a key transcription regulator, are associated with increased susceptibility to lupus and differential gene expression in patients with systemic lupus erythematosus. Arthritis & Rheumatism, 60 (4), 1076-1084 DOI:10.1002/art.24360.

Puckette, M., Peal, L., Steele, J., Tang, Y., & Mahalingam, R. (2009). Ozone responsive genes in Medicago truncatula: Analysis by suppression subtraction hybridization. Journal of Plant Physiology, 166 (12), 1284-1295 DOI:10.1016/j.jplph.2009.01.009.

Gomez, S. K. , Javot, H. , Deewatthanawong, P., Torres-Jerez, I., Tang, Y., Blancaflor, E. B. , Udvardi, M. K., & Harrison, M. J. (2009). Medicago truncatula and Glomus intraradices gene expression in cortical cells harboring arbuscules in the arbuscular mycorrhizal symbiosis. BMC Plant Biology, 9 (10), DOI:10.1186/1471-2229-9-10.

Uppalapati, S. R., Marek, S. M., Lee, H-K. , Nakashima, J., Tang, Y., Sledge, M. K., Dixon, R. A., & Mysore, K. S. (2009). Global gene expression profiling during Medicago truncatula-Phymatotrichopsis omnivora interaction reveals a role for jasmonic acid, ethylene, and the flavonoid pathway in disease development. MPMI - Molecular Plant-Microbe Interactions, 22 (1), 7-17 DOI:10.1094/MPMI -22-1-0007.

Kang, L., Wang, Y - S., Uppalapati, S. R., Wang, K., Tang, Y., Vadapalli, V., Venables, B. J., Chapman, K. D., Blancaflor, E. B. , & Mysore, K. S. (2008). Overexpression of a fatty acid amide hydrolase compromises innate immunity in Arabidopsis. Plant Journal, 56 (2), 336-349 DOI:10.1111/j.1365-313X.2008.03603.x.

Pang, Y., Peel, G. J., Sharma, S. B., Tang, Y., & Dixon, R. A. (2008). A transcript profiling approach reveals an epicatechin-specific glucosyltransferase expressed in the seed coat of Medicago truncatula. PNAS (Proceedings of the National Academy of Sciences), 105 (37), 14210-14215 DOI:10.1073/pnas.0805954105.

Naoumkina, M., Vaghchhipawala, S., Tang, Y., Ben, Y., Powell, R. J., & Dixon, R. A. (2008). Metabolic and genetic perturbations accompany the modification of galactomannan in seeds of Medicago truncatula expressing mannan synthase from guar (Cyamopsis tetragonoloba L.). Plant Biotechnology Journal, 6, 619-631 DOI:10.1111/j.1467-7652.2008.00345.x.

Benedito, V. A., Torres-Jerez, I., Murray, J., Andriankaja, A., Allen, N. S., Kakar, K., Wandrey, M., Verdier, J., Zuber, H., Ott, T., Moreau, S., Niebel, A., Frickey, T., Weiller, G., He, J., Dai, X., Zhao, P. X., Tang, Y., & Udvardi, M. K. (2008). A gene expression atlas of the model legume Medicago truncatula. Plant Journal, 55 (3), 504-513 DOI:10.111/j.1365-313X.2008.03519.x.

Itaya, A., Bundschuh, R., Archual, A. J., Joung, J. G., Fei, Z., Dai, X., Zhao, P. X., & Tang, Y. (2008). Small RNAs in tomato fruit and leaf development. BBA - Biochimica et Biophysica Acta-gene Regulatory Mechanisms, 1779 (2), 99-107 DOI:10.1016/j.bbagrm.2007.09.003.

Anand, A., Uppalapati, S. R., Ryu, C-M., Allen, S. N., Kang, L., Tang, Y., & Mysore, K. S. (2008). Salicylic acid and systemic acquired resistance play a role in attenuating crown gall disease caused by Agrobacterium tumefaciens. Plant Physiology, 146 (2), 703-715 DOI:10.1104/pp.107.111302.

Naoumkina, M., Farag, M. A., Sumner, L. W., Tang, Y., Liu, C.-J., & Dixon, R. A. (2007). Different mechanisms for phytoalexin induction by pathogen and wound signals in Medicago truncatula. PNAS (Proceedings of the National Academy of Sciences), 104 (46), 17909-17915.

Teaster, N. D., Motes, C. M., Tang, Y., Wiant, W. C., Cotter, M. Q., Wang, Y - S., Kilaru, A., Venables, B. J., Hasenstein, K. H., Blancaflor, E. B. , & Chapman, K. D. (2007). N-acylethanolamine metabolism interacts with abscisic acid signaling in Arabidopsis thaliana seedlings. Plant Cell, 19 (8), 2454 DOI:10.1105/tpc.106.048702.

Anand, A., Krichevsky, A., Schornack, S., Lahaye, T., Tzfira, T., Tang, Y., Citovsky, V. , & Mysore, K. S. (2007). Arabidopsis VIRE2 INTERACTING PROTEIN2 is required for Agrobacterium T-DNA integration in plants. Plant Cell, 19 (5), 1695-1708 doi:10.1105/tpc.106.042903.

Deavours, B., Liu, C.-J., Naoumkina, M., Tang, Y., Farag, M. A., Sumner, L. W., Noel, J. P., & Dixon, R. A. (2006). Functional analysis of members of the isoflavone and isoflavanone O-methyltransferase enzyme families from the model legume Medicago truncatula. Plant Molecular Biology, 62 (4-5), 715-733 doi: 10.1007/s11103-006-9050-x .